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Org Makerby PixelA tool for building org files, the music format used in Cave Story. Org Maker 2 by Pixel/Rxo InverseAn updated version of Org Maker. Though some of the newer instruments may be incompatible with Cave Story. ORGasmby Moose A program made to expand upon Org Maker by adding extra features and making it easier to use.
Org Maker v1.3.4
v1.3.4 Translation Patch		 Org Maker v2.0.5
v2.0.5 Translation		 ORGasm 0.7.0 Beta
SeaToneby sshsigiOpens, creates and edits both the PixTone and updated SeaTone .pxt formats. Comes with a program that imports and extracts .pxt files to and from Cave Story. pxtone Playerby Pixel Plays Pixel's .pttune and .ptcop music formats. While the player from pxtone Collage is the most up-to-date, this build comes with the Guxt soundtrack. pxtone Collageby Pixel A set of tools for creating pxtone formats such as .pttune, .ptcop, .ptvoice, and .ptnoise. Comes with the latest build of pxtone Player.
SeaTone r1 pxtone Player v0.8.1.4 pxtone Collage v.0.8.8.8
pxtone Collage v.0.9.1.4
Org2XMby Jan "Rrrola" KadleConverts Organya (.org) files into XM modules (.xm). WinAmp ORG pluginby Echidna-san (JTE)A plugin that allows Winamp to play the ORG music format. PiyoPiyoPlayerby Pixel Plays Pixel's .pmd music format.
Org2XM v1.0 [link unavailable] PiyoPiyoPlayer v2.1
PixToneby PixelOpens Pixel's .pxt format, can be used to create sound effects. Not to be confused with pxtone. Organya File Playerby Tekito Co.Plays .org files.  
PixTone v.1.0.3 Organya File Player v0.2b+